BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes

Publication

Athey, T.L., Wright, M. A., Pavlovic, M., Chandrashekhar, V., Deisseroth, K., Miller, M.I., Vogelstein, J.T. (2023). BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes.

BioRxiv: https://www.biorxiv.org/content/10.1101/2023.02.28.530429v2

BrainLine: Whole-Brain Fluorescence Volume Analysis Pipeline

• First, make sure that you have installed the brainlit package: Installation.

• Some figure panels in our paper were created in brainlit/experiments/BrainLine/BrainLine_transfer_learning.ipynb.

• For information about the pipeline, see BrainLine Tutorials