{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Visualization of Neighborhoods Tutorial"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"**Objective**: \n",
"This tutorial covers how to perform visualize neighborhoods based on two approaches. \n",
" \n",
" 1) Grabbing a bounding box region a vertex\n",
" 2) Grabbing n neighbors around a vertex"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
"from brainlit.utils.Neuron_trace import NeuronTrace\n",
"from brainlit.utils.session import NeuroglancerSession\n",
"import numpy as np\n",
"from cloudvolume import CloudVolume\n",
"import napari\n",
"from napari.utils import nbscreenshot\n",
"\n",
"%gui qt5"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"**Reading data from s3 path**"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"Downloading: 100%|██████████| 1/1 [00:00<00:00, 8.06it/s]\n",
"Downloading: 100%|██████████| 1/1 [00:00<00:00, 9.13it/s]\n"
]
},
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