Neuron Sampling and Mapping

Poster

Athey, T. L., Vogelstein, J. T., & Miller, M. I. (2022). Nyquist Sampling Rate for Projection Neuron Reconstruction. Poster at Society for Neuroscience Meeting.

Relevant directory

brainlit/experiemnts/map_neurons

Nyquist Sampling Rate for Projection Neuron Reconstruction

  • First, make sure that you have installed the brainlit package [Documentation].

  • Results are in the notebook: brainlit/experiments/register_axons/sampling.ipynb

Neuron Mapping

  • First, make sure that you have installed the brainlit package [Documentation].

  • Second, uncompress the data brainlit/experiments/register_axons/data/mapping-files.zip.

  • Then, you can run the notebook that generates figures: brainlit/experiments/register_axons/map_neurons.ipynb

  • The files in the other are more for scratch work, and are unlikely to be useful to new users.