Neuron Sampling and Mapping

Poster

Athey, T. L., Vogelstein, J. T., & Miller, M. I. (2022). Nyquist Sampling Rate for Projection Neuron Reconstruction. Poster at Society for Neuroscience Meeting.

Relevant directory

brainlit/experiemnts/map_neurons

Nyquist Sampling Rate for Projection Neuron Reconstruction

• First, make sure that you have installed the brainlit package [Documentation].

• Results are in the notebook: brainlit/experiments/register_axons/sampling.ipynb

Neuron Mapping

• First, make sure that you have installed the brainlit package [Documentation].

• Second, uncompress the data brainlit/experiments/register_axons/data/mapping-files.zip.

• Then, you can run the notebook that generates figures: brainlit/experiments/register_axons/map_neurons.ipynb

• The files in the other are more for scratch work, and are unlikely to be useful to new users.